Hi mir4ea, I don't have any way currently set up to do that. But I'm sure there ought to be a lot of various software timers out there that you can use separately from MoI. I wouldn't be surprised if some could monitor how long a particular application has been running as well.
Here's one that I found for example after a quick google search for "application timer": http://www.timesnapper.com/ - it can give you a report for how much time any particular application has been running.
There are also various other timer apps listed here: http://lifehacker.com/tag/time-tracker
- Michael
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