I tried to wait and watch the time.
Came back 14 minutes later leaving PC alone and operation seem finished but it was not joined.
(like it canceled itself or something)
I tried to scale one model by factor 0,95 and it took about few seconds. (good tip)
I don't mind waiting for complex calculations, I understand.
But why it won't even perform it when both models are 100%.
Also, it is acting really weird.
Can you please try yourself following:
Scale down one model by factor 0,99 and do a boolean union or isect.
I think it should make one object merging everything in it.
But this do something like diff with the models (taking about 10 seconds).
Also tried merge in this way and it seems like it does absolutely nothing (calculating for few seconds).
Same goes when I try diff.
Can you please try yourself and let me know?
Thanks a lot
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