Hi Andy,
re:
> How can I separate all of these out and give them unique names?
Do Ctrl+A to select everything, then click on the name line in the properties panel in the upper right which will say "(varies)", press OK on the "Edit object name" dialog without putting in any name there and the name property will be removed from everything. Then when you export that to fbx unique names will be automatically generated.
You also might try a setting in moi.ini :
[NURBS Import]
UseHierarchicalNames=y
That will change the way names are processed in the import into MOI.
- Michael
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