I knew about the Ahk_class and had it working properly for one setting, but putting:

#SingleInstance force
#InstallKeybdHook
#InstallMouseHook
SetTitleMatchMode, 2
#IfWinActive ahk_class MoiMainWindow


into the hotkey script that the Radial Menu uses, works awesome!!!

wicked!

Now the Radial Menus no longer interfere with other hotkeys of other applications. Thanx Robert!

I will update the menus when I am done, and Moi can have radial menus :)