trim Error

 From:  mattj (MATTJENN)
6732.1 
Hi

I am trying to cut two holes into an aircraft fuselage using the large extruded shape filled in dark yellow. However if i do boolean, or trim i get this weird artefact going on.
Note: the bottom half did get a good cut. What am I doing wrong . . ? I have never seen this before . .
See attached image and .3dm file
Any help gladly received :-)

matt
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