Ok, I'm attaching a PNG with the export of what LibreCAD and Inkscape seem to come up with. I guess this is more in reference than anything else, since I downloaded a trial of CorelDraw which is what the laser cutter software uses to actually do the cuts and it looks fine there. In addition I opened up the DXF with a free viewer on my iPad and it looks fine there too. I tried FreeCAD and it had the same positioning problems as inkscape and LibreCAD but also had the additional problem of looking like someone drew the picture with a crayon. Go figure.

I would understand if things were squished or distorted, but the issue is a weird thing where it just moves circles around to where they shouldn't be.