Hi Anis, Geomagic ( http://www.geomagic.com) tends to be mentioned often for processing point cloud data, that might be a good place to start.
Rhino also has some specific tools for point clouds, that may also be worth checking out.
The kind of thing you're talking about is often called "Plant design" - try searching for terms like: point cloud plant design to find some various specialized software for that kind of stuff, like this:
http://www.kubitusa.com/CAD/Products/PointSense/Plant.php
- Michael
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